Skip to content

SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Scotland

Summary

Abstract

Summary of SARS-CoV-2 lineages and mutations

Keywords

Publisher

  • Identifier
    7
  • Name
    Public Health Scotland
  • Logo
  • Description
    Public Health Scotland is an NHS Board. We are uniquely sponsored by the Scottish Government and the Convention of Scottish Local Authorities (COSLA) on behalf of local government.
  • Contact point

Documentation

Description

File contains basic public metadata, including sequence_name, location, date, pangolin lineage assignment, version and associated scores, scorpio VOC/VUI constellation call and associated scores, key spike protein mutations calls and a list of all nucleotide mutations found.

Coverage

Spatial

  • Spatial coverage

    United Kingdom, Scotland

  • Geographic levels
    Not available

Temporal

  • Start date
    28/02/2021
  • End date
    Not available
  • Frequency
    Weekly
  • Distribution release date
    19/08/2021

Provenance

  • Purpose
    Other
  • Source
    Lims
  • Collection situation
    Not available

Access and governance

  • Conditions of access
    Genetic studies only

Requesting access to this data

This is a secure dataset that can only be accessed by researchers from approved organisations.

Find out how to apply to access this dataset

Usage

  • Conditions of use
    Project-specific restrictions
  • Resource creator
    COG-UK
  • Is referenced by
    Not available

Access

Format and standards

  • Language
    English
  • Format
    csv

Enrichment and linkage

  • Related datasets
    • Not available
  • Linkage opportunity
    Not available
  • Tools
    • Not available

Synthetic data

Synthetic data is not yet available for this dataset. 

Data dictionary

COG-UK Metadata File

PSEUDO-ANONYMISED ID NUMBER

PSEUDO-ANONYMISED ID NUMBER

SEQUENCE_NAME

sequence_name

SHORTID

shortid

COUNTRY

country

ADM1

adm1

IS_PILLAR_2

is_pillar_2

SAMPLE_DATE

sample_date

EPI_WEEK

epi_week

LINEAGE

lineage

LINEAGE_SUPPORT

lineage_support

Variable description

Data type